The School of Medicine at the University of Warmia and Mazury in Olsztyn is organized into departments, each dedicated to specific disciplines within the medical sciences. Below is a list of the key departments:

1. Department of Anatomy and Histology    

2. Department of Anesthesiology and Intensive Care

• Anesthesiology and Intensive Care Clinical Ward
• 2nd Anesthesiology  and Intensive Care Clinical Ward

3. Department of Cardiology and Internal Medicine

• Cardiology Clinic
• Allergology and Pulmonology Clinical Ward
• Internal Medicine Clinical Ward
• Cardiology and Internal Medicine Clinical Ward

4. Department of Clinical Pediatrics

• Pediatric, Endocrinology and Nutrition Clinic
• Head and Neck Surgery Clinic for Children and Youth
• Pathology and Birth Defects of Neonatal and Infants Clinical Ward
• Pediatric and Hematological-Oncology Clinical Ward

5. Department of Dermatology, Sexually Transmitted Diseases and Clinical Immunology

• Dermatology, Sexually Transmitted Diseases and Clinical Immunology Clinic

6. Department of Emergency Medicine

• Emergency Medicine Clinical Ward

7. Department of Family Medicine and Infectious Diseases 

• Infectious Diseases Clinical Ward

8. Department of General Surgery

9. Department of General, Minimally Invasive and Geriatric Surgery

• Perinatology, Surgical and Oncological Gynecology Clinic

11. Department of Human Physiology and Pathophysiology
12. Department of Internal Medicine

• Endocrinology, Diabetology and Internal Medicine Clinic
• Nephrology, Hypertensiology and Internal Medicine Clinic
• Hematology Clinical Ward

13. Department of Neurology and Neurosurgery

• Neurology Clinic
• Neurosurgery Clinic
• General and Neurological Rehabilitation Clinical Ward
• Innovative Neurosurgery and Neurophysiology Department
• Coma Treatment for Adults Clinical Ward 

14. Department of Oncology

• Radiotherapy Clinic
• Palliative Medicine and Psychooncology Clinic
• Onclogy and Immunuoncology Clinic

15. Department of Opthalmology

• Ophthalmology Clinical Ward

16. Department of Otholaryngology and Head and Neck Disease

• Otholaryngology and Head and Neck Disease Clinic

17. Department of Pathomorphology and Forensic Medicine

• Pathomorphology Institute

18. Department of Pharmacology and Toxycology

19. Department of Pulmonology

20. Department of Radiology

21. Department of Rheumatology, Orthopedics and Rehabilitation

22. Dean's Office

Auxiliary Units

 1. Department of Didactics and Medical Simulation of Collegium Medicum with the Center for Medical Simulation

 2. Office for Forensic Medical Opinion

 3. Stem Cell Research Laboratory